Articole publicate in perioada 2008-2011

  • Oscar H. Ibarra, Andrei Paun : "Computing with cells: membrane systems - some complexity issues", IJPEDS 23(5): 347-365 (2008)
  • John Jack, Alfonso Rodríguez-Patón, Oscar H. Ibarra, Andrei Paun : "Discrete Nondeterministic Modeling of the Fas Pathway", Int. J. Found. Comput. Sci. 19(5): 1147-1162 (2008)
  • John Jack, Andrei Paun : "Discrete Modeling of Biochemical Signaling with Memory Enhancement", T. Comp. Sys. Biology 11: 200-215 (2009)
  • Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón : "On the Hopcroft's minimization technique for DFA and DFCA", Theor. Comput. Sci. 410(24-25): 2424-2430 (2009)
  • Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón : "Sequential SNP systems based on min/max spike number", Theor. Comput. Sci. 410(30-32): 2982-2991 (2009)
  • D. Bratosin, L. Tcacenco, Manuela Sidoroff, C. Cotoraci, C. Slomianny, J. Estaquier, J. Montreuil : "Active Caspases -8 and -3 in Circulating Human Erythrocytea Purified on Immobilized Annexin-V; A Cytometric demonstration", Cytometry Part A: 236-244 (2009)
  • Ni, SH; Wang, P; Paun, M; Dai W, Paun, A : "Spotted cDNA microarray image segmentation using ACWE", Romanian Journal of Information Science and Technology, Volume 12, Issue 2, 2009, Pages 249-263
  • Marian Butu, Alina Butu : "Parallel molecular dynamics simulation for protein sequences on PC-cluster and server", Journal of Optoelectronics and Advanced Materials, 12(11), 2296-2300, 2010
  • John Jack, Andrei Paun, Alfonso Rodríguez-Patón : "A review of the nondeterministic waiting time algorithm", Natural Computing 10(1): 139-149 (2011)
  • Bratosin D., Iordachel C., Rugina A., Gheorghe A-M, Ciotec A, Efimov N, Sidoroff M. : "Celular methods for in vitro engineering of human autologous cartilage: a review", Studia Universitatis "Vasile Goldis", Seria Stiintele Vietii, vol.21, S1, pp. 175-182, 2011, ISSN: 1584-2363
  • Bratosin D., Sidoroff M. : "New horizons in flow citometry by cytomics and bioinformatics. A minireview", Studia Universitatis "Vasile Goldis", Seria Stiintele Vietii, vol 21, S1, 2011, pp. 81-90
  • Andrei Bancila, Mihaela Paun, Stefan Popescu, Laura Paun, George Roata, Iris Mateescu, Marian Butu, Andrei Paun, Manuela Sidoroff : "The SIS algorithm and its applications", Banat′s Journal of Biotechnology, ISSN 2068-4673 (Print), ISSN 2068-4738 (CDROM), vol 2(2), 2011
  • Iris Maria Mateescu, Stefan Popescu, Laura Paun, George Roata, Andrei Bancila, Anca Oancea : "Bioeconomy. What is bioeconomy? How will bioeconomy develop the next two decades?", Studia Universitatis "Vasile Goldis", Seria Stiintele Vietii, Vol. 21, issue 2, 2011, pp. 451-456
  • Andrei Paun, Mihaela Paun, Alfonso Rodriguez Paton, Manuela Sidoroff : "P systems with proteins on membranes: a survey", International Journal Of Foundations Of Computer Science, Volume No. 22, Issue No. 01, ISSN :0129-0541


Carti publicate

  • Manuela Elisabeta Sidoroff, Alina Butu, Marian Butu : Bioinformatica Vol I, Editura Tehnica Bucuresti, 2006, ISBN(10)973-31-2290-4;ISBN(13)978-973-31-2290-6
  • Alexandru Manoliu, Manuela Elisabeta Sidoroff, Lacrimioara Oprica, Sorin Diaconeasa, Tatiana Tofan-Burac : Dictionar Poliglot de Biotehnologie, Editura Tehnica Bucuresti, 2007, ISBN 978-973-31-2324-8
  • Manuela Elisabeta Sidoroff : Bioinformatica Vol II, Editura Tehnica Bucuresti, 2008, ISBN(10)973-31-2290-4;ISBN(13)978-973-31-2290-6
  • Andrei Paun : Computability of the DNA and Cells: Splicing and Membrane Computing, SBEB Publishing, 2008, ISBN: 978-0-9802368-4-2
  • Andrei Paun, Mihaela Paun : Analiza Statistica Folosind Limbajul R, Editura Matrix, Bucuresti 2009, ISBN:978-973-755-514-4


Capitole de carte publicate

  • O.H. Ibarra, A. Paun : "Membrane Systems: A 'Natural' Way of Computing with Cells', Handbook of Parallel Computing: Models, Algorithms and Applications, Chapman & Hall/Crc Computer & Information Science Series, 2007, ISBN: 978-1-5848862-3-5
  • Iulia Stanciu : "Materialul Genetic", Bioinformatica Vol II, Editura Tehnica Bucuresti, 2008, ISBN(10)973-31-2290-4;ISBN(13)978-973-31-2290-6
  • Voicu Boscaiu : "Introducere in verificarea ipotezelor statistice pentru microarrys", Bioinformatica Vol II, Editura Tehnica Bucuresti, 2008, ISBN(10)973-31-2290-4;ISBN(13)978-973-31-2290-6
  • Marian Butu, Alina Butu : "Metode de analiză a proteinelor", Bioinformatica Vol II, Editura Tehnica Bucuresti, 2008, ISBN(10)973-31-2290-4;ISBN(13)978-973-31-2290-6
  • Andrei Paun, Iulia Stanciu, Andrei Bancila , Bianca Pop : "Calculabilitatea pe baza de membrane si proteine", Bioinformatica Vol II, Editura Tehnica Bucuresti, 2008, ISBN(10)973-31-2290-4;ISBN(13)978-973-31-2290-6
  • Stefan Stefanescu, Manuela Elisabeta Sidoroff : "Prognoza evolutiei dinamice a reactiilor chimice", Bioinformatica Vol II, Editura Tehnica Bucuresti, 2008, ISBN(10)973-31-2290-4;ISBN(13)978-973-31-2290-6
  • R. Freund, O. Ibarra, A. Paun, P. Sosik, H-C. Yen : "Catalytic P systems", The Oxford Handbook of Membrane Computing, Oxford University Press, 2010, ISBN(13) 978-0-1995566-7-0
  • O.H Ibarra, A. Leporati, A. Paun, S. Woodworth : "Spiking Neural P Systems: Characterizations and Complexity", The Oxford Handbook of Membrane Computing, Oxford University Press, 2010, ISBN(13) 978-0-1995566-7-0


Participari la conferinte

  • Andrei Paun, Alfonso Rodríguez-Patón : "On Flip-Flop Membrane Systems with Proteins", Workshop on Membrane Computing 2007: 414-427
  • Manuela E. Sidoroff, Lucia Moldovan, Oana Craciunescu, S. Manoiu : "Development of some biocompatible collagen-chondroitin sulfate-hydroxyapatite composites for tissue regeneration", NANO-2008. 9th International Conference on nanostructured materials, Rio de Janeiro, Brasil, 1-6 June 2008
  • T. Gh. Negoita, G. Bahrim, M. Cortalet, W.Wenliang, M. Sidoroff : "Microbiological Study of Grove Mountains soils, East Antarctica", Polar research - Arctic and Antarctic Perspectives in the International polar Year, St. Petersburg, Russia, 8-11 July 2008
  • Voicu Boscaiu, Daniela Bratosin, Manuela Sidoroff : "On genes clustering based on correlation measures", International Workshop "Integrative Bioinformatics", Leucorea, Lutherstadt Wittenberg, Germany, 22-24 August 2008
  • V. Boscaiu, M. Sidoroff, I. Stanciu : "Is Partial Correlation a Safe Tool?", 3rd Functional Genomics Conference, Innsbruck, Austria, 21-24 September 2008
  • S. Stefanescu, M.E. Sidoroff : "Comparing more stochastic simulation algorithms in biology", Le 9ème Colloque Franco-Roumain de Mathématiques Appliquées, 2008
  • Voicu Boscaiu, Daniela Bratosin, Manuela Sidoroff : "Multinomial classification models in biostatistics", Applied Statistics International Conference, Bled - Slovenia, 22-24 September 2008
  • John Jack, Andrei Paun, Alfonso Rodríguez-Patón : "Effects of HIV-1 Proteins on the Fas-Mediated Apoptotic Signaling Cascade: A Computational Study of Latent CD4+ T Cell Activation", Workshop on Membrane Computing 2008: 246-259
  • Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón : "Sequentiality Induced by Spike Number in SNP Systems", DNA Computing 2008: 179-190
  • Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón : "Hopcroft's Minimization Technique: Queues or Stacks?", CIAA 2008: 78-91
  • John Jack, Andrei Paun : "The Nondeterministic Waiting Time Algorithm: A Review", DCFS 2009: 29-46
  • Petr Sosík, Andrei Paun, Alfonso Rodríguez-Patón and David Pérez : "On the Power of Computing with Proteins on Membranes", Membrane Computing 2010, Lecture Notes in Computer Science, 2010, Volume 5957/2010, 448-460
  • A. Paun, Manuela Sidoroff : "Sequentiality Induced by Spike Number in SNP Systems: small universal machines", Conference on Membrane Computing 2011, Lecture Notes in Computer Science 7184, ISSN 0302-9743, ISBN 978-3-642-28023-8